If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ), 'gf_id' => 'HOM05D000932', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000932' ), 'data_identifier' => 'HOM05D000932', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000932', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '645', 'num_species' => '98' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p40650' => 'bna', 'A02p06670' => 'bna', 'A03p37850' => 'bna', 'A04p14510' => 'bna', 'A04p25660' => 'bna', 'A05p12170' => 'bna', 'A05p36610' => 'bna', 'A08p36900' => 'bna', 'A09p15300' => 'bna', 'A10p02920' => 'bna', 'A10p17200' => 'bna', 'Aa31LG1G12120' => 'aar', 'Aa31LG1G20370' => 'aar', 'Aa31LG2G990' => 'aar', 'Aa31LG5G3960' => 'aar', 'Aa31LG8G120' => 'aar', 'Aa31LG9G570' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_368.1932' => 'aag', 'Actinidia00809' => 'ach', 'Actinidia03768' => 'ach', 'Actinidia11370' => 'ach', 'Actinidia12780' => 'ach', 'Actinidia33741' => 'ach', 'Actinidia39927' => 'ach', 'Ah.04g155260' => 'amhyb', 'Ah.07g196440' => 'amhyb', 'Ah.08g215020' => 'amhyb', 'Ah.15g096310' => 'amhyb', 'AL1G14150' => 'aly', 'AL2G11320' => 'aly', 'AL3G24560' => 'aly', 'AL4G29000' => 'aly', 'AL7G48040' => 'aly', 'AL8G36560' => 'aly', 'Aqoxy3G01009' => 'aox', 'Aqoxy4G03107' => 'aox', 'Aqoxy5G00151' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22FLX8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3QBB6E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9Y5DYJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AE0X9Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AGT1RS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B2EAID' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BU1BMX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXJN39' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.EF48U6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FA5JII' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ICH4NU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IR754M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KU7VJQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UNUG60' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZRH25X' => 'arhy', 'AT1G04500' => 'ath', 'AT1G63820' => 'ath', 'AT2G33350' => 'ath', 'AT3G12890' => 'ath', 'AT5G41380' => 'ath', 'AT5G59990' => 'ath', 'ATR0661G132' => 'atr', 'ATR0763G020' => 'atr', 'ATR0787G144' => 'atr', 'Atru.chr1.187' => 'acertr', 'Atru.chr3.3781' => 'acertr', 'Atru.chr4.1926' => 'acertr', 'Atru.chr4.1927' => 'acertr', 'Atru.chr9.2152' => 'acertr', 'AUR62001856' => 'cqu', 'AUR62009650' => 'cqu', 'AUR62016173' => 'cqu', 'AUR62026898' => 'cqu', 'AUR62035091' => 'cqu', 'BcaB02g07895' => 'bca', 'BcaB02g10553' => 'bca', 'BcaB03g13484' => 'bca', 'BcaB04g18734' => 'bca', 'BcaB04g21043' => 'bca', 'BcaB05g22601' => 'bca', 'BcaB06g25503' => 'bca', 'BcaB06g27617' => 'bca', 'BcaB06g28677' => 'bca', 'BcaB07g31411' => 'bca', 'BcaB07g31549' => 'bca', 'BcaB08g36204' => 'bca', 'BcaC01g04040' => 'bca', 'BcaC02g07835' => 'bca', 'BcaC02g08961' => 'bca', 'BcaC02g11421' => 'bca', 'BcaC04g19654' => 'bca', 'BcaC04g22505' => 'bca', 'BcaC05g29229' => 'bca', 'BcaC08g44527' => 'bca', 'BcaC09g48274' => 'bca', 'BcaC09g48275' => 'bca', 'BolC1t05165H' => 'bol', 'BolC2t07295H' => 'bol', 'BolC3t16868H' => 'bol', 'BolC4t23143H' => 'bol', 'BolC4t26435H' => 'bol', 'BolC4t27764H' => 'bol', 'BolC5t29048H' => 'bol', 'BolC5t34172H' => 'bol', 'BolC6t37167H' => 'bol', 'BolC8t46918H' => 'bol', 'BolC9t54753H' => 'bol', 'BolC9t58116H' => 'bol', 'BraA01t04099Z' => 'bra', 'BraA02t05749Z' => 'bra', 'BraA03t12940Z' => 'bra', 'BraA04t17096Z' => 'bra', 'BraA04t18070Z' => 'bra', 'BraA05t20161Z' => 'bra', 'BraA05t22462Z' => 'bra', 'BraA08t35590Z' => 'bra', 'BraA09t37175Z' => 'bra', 'BraA10t42561Z' => 'bra', 'BraA10t43801Z' => 'bra', 'C01p52260' => 'bna', 'C02p11960' => 'bna', 'C03p45910' => 'bna', 'C04p15740' => 'bna', 'C04p48430' => 'bna', 'C04p62810' => 'bna', 'C05p02670' => 'bna', 'C05p55040' => 'bna', 'C06p19800' => 'bna', 'C08p01180' => 'bna', 'C09p18570' => 'bna', 'C09p52490' => 'bna', 'CAN.G220.76' => 'can', 'CAN.G532.9' => 'can', 'CAN.G566.17' => 'can', 'CAN.G943.43' => 'can', 'CAN.G971.7' => 'can', 'CANSAT54G2797' => 'cansat', 'CANSAT78G0790' => 'cansat', 'CANSAT80G0834' => 'cansat', 'CARHR003840' => 'chi', 'CARHR047380' => 'chi', 'CARHR087410' => 'chi', 'CARHR127350' => 'chi', 'CARHR212950' => 'chi', 'CARHR273630' => 'chi', 'Carub.0001s0370' => 'cru', 'Carub.0002s0103' => 'cru', 'Carub.0003s1225' => 'cru', 'Carub.0004s1497' => 'cru', 'Carub.0007s3410' => 'cru', 'Carub.0008s2069' => 'cru', 'Ca_01362_v3' => 'car', 'Ca_03657_v3' => 'car', 'Ca_11908_v3' => 'car', 'Ca_24547_v3' => 'car', 'CBR_g66814' => 'cbr', 'Cc00_g29930' => 'ccan', 'Cc01_g12030' => 'ccan', 'Cc05_g16220' => 'ccan', 'Cc08_g15020' => 'ccan', 'CDE02G1451' => 'cde', 'CDE05G1527' => 'cde', 'CDE05G1610' => 'cde', 'CDE06G2614' => 'cde', 'CDE07G0091' => 'cde', 'Cfa011417' => 'cfa', 'Cfa012201' => 'cfa', 'Cfa019414' => 'cfa', 'Ciclev10004980m.g' => 'ccl', 'Ciclev10005692m.g' => 'ccl', 'Ciclev10021189m.g' => 'ccl', 'Ciclev10029153m.g' => 'ccl', 'CiPaw.01G178700' => 'cil', 'CiPaw.02G107500' => 'cil', 'CiPaw.11G062200' => 'cil', 'CiPaw.11G132500' => 'cil', 'CiPaw.12G090900' => 'cil', 'CiPaw.13G102500' => 'cil', 'ClCG01G002510' => 'cla', 'ClCG02G018550' => 'cla', 'ClCG02G020570' => 'cla', 'ClCG03G001780' => 'cla', 'ClCG06G007250' => 'cla', 'ClCG09G022600' => 'cla', 'COL.COLO4_18415' => 'col', 'COL.COLO4_34499' => 'col', 'COL.COLO4_38372' => 'col', 'Cpa.g.sc139.5' => 'cpa', 'Cpa.g.sc180.14' => 'cpa', 'Cpa.g.sc331.5' => 'cpa', 'Cpa.g.sc44.6' => 'cpa', 'Cre07.g351550' => 'cre', 'CsaV3_1G033810' => 'csa', 'CsaV3_2G012450' => 'csa', 'CsaV3_5G002610' => 'csa', 'CsaV3_6G013650' => 'csa', 'CsaV3_6G022010' => 'csa', 'CsaV3_7G022750' => 'csa', 'CSS0007596' => 'camsi', 'CSS0007952' => 'camsi', 'CSS0008478' => 'camsi', 'CSS0010735' => 'camsi', 'CSS0011498' => 'camsi', 'CSS0019563' => 'camsi', 'CSS0020646' => 'camsi', 'CSS0034563' => 'camsi', 'DCAR_000082' => 'dca', 'DCAR_000626' => 'dca', 'DCAR_002299' => 'dca', 'DCAR_005294' => 'dca', 'DCAR_006019' => 'dca', 'DCAR_008365' => 'dca', 'DCAR_013732' => 'dca', 'DCAR_030760' => 'dca', 'Dinv06294' => 'din', 'Dinv19607' => 'din', 'Dinv29807' => 'din', 'Dinv32825' => 'din', 'Dinv37618' => 'din', 'Dinv38920' => 'din', 'Dinv42503' => 'din', 'Duzib068G0955' => 'dzi', 'Duzib151G0926' => 'dzi', 'Duzib168G1389' => 'dzi', 'Duzib170G0631' => 'dzi', 'Duzib187G0060' => 'dzi', 'Duzib205G0545' => 'dzi', 'Duzib212G0703' => 'dzi', 'Duzib213G0490' => 'dzi', 'ECA233G3587' => 'eca', 'ECA236G3534' => 'eca', 'ECA238G2475' => 'eca', 'ECA240G4070' => 'eca', 'ECA247G3745' => 'eca', 'ECA248G3283' => 'eca', 'EL10Ac2g03170' => 'bvu', 'EL10Ac3g04948' => 'bvu', 'EL10Ac5g12804' => 'bvu', 'EL10Ac7g15936' => 'bvu', 'Eucgr.E00639' => 'egr', 'Eucgr.F01466' => 'egr', 'Eucgr.H00131' => 'egr', 'Eucgr.H02941' => 'egr', 'Eucgr.H02948' => 'egr', 'Eucgr.H02954' => 'egr', 'Eucgr.J02104' => 'egr', 'FAN08G3463' => 'fan', 'FAN11G1095' => 'fan', 'FAN11G1453' => 'fan', 'FAN12G1711' => 'fan', 'FAN16G0142' => 'fan', 'FAN16G2793' => 'fan', 'FAN17G1575' => 'fan', 'FAN19G0306' => 'fan', 'FAN21G0644' => 'fan', 'FAN21G3891' => 'fan', 'FAN22G1526' => 'fan', 'FAN23G0457' => 'fan', 'FAN25G0417' => 'fan', 'FAN25G3067' => 'fan', 'FAN26G2342' => 'fan', 'FAN28G0866' => 'fan', 'FvH4_1g29660' => 'fve', 'FvH4_3g15550' => 'fve', 'FvH4_3g34540' => 'fve', 'FvH4_4g04500' => 'fve', 'FvH4_5g02850' => 'fve', 'Glyma.01G221100' => 'gma', 'Glyma.05G209800' => 'gma', 'Glyma.08G016500' => 'gma', 'Glyma.08G168900' => 'gma', 'Glyma.10G134400' => 'gma', 'Glyma.10G190300' => 'gma', 'Glyma.11G022600' => 'gma', 'Glyma.11G146690' => 'gma', 'Glyma.12G074400' => 'gma', 'Glyma.13G331000' => 'gma', 'Glyma.15G219800' => 'gma', 'Glyma.15G258200' => 'gma', 'Glyma.20G085100' => 'gma', 'Glyma.20G200400' => 'gma', 'Gohir.A01G095600' => 'ghi', 'Gohir.A02G042600' => 'ghi', 'Gohir.A03G036900' => 'ghi', 'Gohir.A04G051500' => 'ghi', 'Gohir.A05G099300' => 'ghi', 'Gohir.A07G094600' => 'ghi', 'Gohir.A08G184100' => 'ghi', 'Gohir.A09G059500' => 'ghi', 'Gohir.A09G192000' => 'ghi', 'Gohir.A10G109100' => 'ghi', 'Gohir.A10G109116' => 'ghi', 'Gohir.A11G022833' => 'ghi', 'Gohir.A12G231000' => 'ghi', 'Gohir.D01G079800' => 'ghi', 'Gohir.D02G048200' => 'ghi', 'Gohir.D03G131400' => 'ghi', 'Gohir.D05G099200' => 'ghi', 'Gohir.D05G329800' => 'ghi', 'Gohir.D07G098900' => 'ghi', 'Gohir.D08G202600' => 'ghi', 'Gohir.D09G058800' => 'ghi', 'Gohir.D09G186300' => 'ghi', 'Gohir.D10G158700' => 'ghi', 'Gohir.D11G022399' => 'ghi', 'Gohir.D12G232100' => 'ghi', 'Gorai.001G106600' => 'gra', 'Gorai.002G104600' => 'gra', 'Gorai.003G138200' => 'gra', 'Gorai.004G214000' => 'gra', 'Gorai.005G053500' => 'gra', 'Gorai.006G073000' => 'gra', 'Gorai.006G209000' => 'gra', 'Gorai.007G023900' => 'gra', 'Gorai.008G248400' => 'gra', 'Gorai.009G103100' => 'gra', 'Gorai.009G353200' => 'gra', 'Gorai.011G178300' => 'gra', 'GSVIVG01019393001' => 'vvi', 'GSVIVG01020352001' => 'vvi', 'GSVIVG01025065001' => 'vvi', 'GSVIVG01027910001' => 'vvi', 'HanXRQChr01g0022961' => 'han', 'HanXRQChr02g0059301' => 'han', 'HanXRQChr03g0085921' => 'han', 'HanXRQChr06g0182791' => 'han', 'HanXRQChr08g0230561' => 'han', 'HanXRQChr11g0335061' => 'han', 'HanXRQChr13g0394131' => 'han', 'HanXRQChr14g0434831' => 'han', 'Haze_07843' => 'cav', 'Haze_08815' => 'cav', 'Haze_11453' => 'cav', 'Haze_23997' => 'cav', 'Hma1.2p1_0035F.1_g021790' => 'hma', 'Hma1.2p1_0377F.1_g139450' => 'hma', 'Hma1.2p1_1123F.1_g259400' => 'hma', 'HPP92_002584' => 'vpl', 'HPP92_008532' => 'vpl', 'HPP92_019084' => 'vpl', 'Hund05021' => 'sun', 'Hund11451' => 'sun', 'Hund18947' => 'sun', 'Hund20095' => 'sun', 'Lalb_Chr01g0020301' => 'lal', 'Lalb_Chr02g0150671' => 'lal', 'Lalb_Chr03g0026971' => 'lal', 'Lalb_Chr03g0031751' => 'lal', 'Lalb_Chr05g0224621' => 'lal', 'Lalb_Chr06g0169501' => 'lal', 'Lalb_Chr21g0312501' => 'lal', 'Lalb_Chr24g0394321' => 'lal', 'Lalb_Chr25g0284851' => 'lal', 'Lj2A1045T49' => 'lonja', 'Lj3A649T59' => 'lonja', 'Lj3g0007504' => 'lja', 'Lj3g0019030' => 'lja', 'Lj3g0021931' => 'lja', 'Lj4g0000406' => 'lja', 'Lj5g0023532' => 'lja', 'Lj6C622T6' => 'lonja', 'Lj6g0022305' => 'lja', 'Lj8A218T21' => 'lonja', 'LjContig00312_ERROPOS870357g0008521' => 'lja', 'Lsat_1_v5_gn_1_75661' => 'lsa', 'Lsat_1_v5_gn_2_40740' => 'lsa', 'Lsat_1_v5_gn_6_4580' => 'lsa', 'Lsat_1_v5_gn_6_66601' => 'lsa', 'Lsat_1_v5_gn_6_85380' => 'lsa', 'Lsat_1_v5_gn_7_111641' => 'lsa', 'Lsat_1_v5_gn_9_21300' => 'lsa', 'Manes.01G060500' => 'mes', 'Manes.02G021800' => 'mes', 'Manes.03G159600' => 'mes', 'Manes.06G173501' => 'mes', 'Manes.06G173600' => 'mes', 'Manes.11G137200' => 'mes', 'Manes.14G012100' => 'mes', 'Manes.15G045300' => 'mes', 'Mapoly0033s0056' => 'mpo', 'MBI04_g00365_MAGBIO' => 'mbi', 'MBI04_g00369_MAGBIO' => 'mbi', 'MBI04_g00371_MAGBIO' => 'mbi', 'MBI07_g12939_MAGBIO' => 'mbi', 'MBI10_g21711_MAGBIO' => 'mbi', 'MBI10_g21712_MAGBIO' => 'mbi', 'MBI10_g27527_MAGBIO' => 'mbi', 'MBI14_g20929_MAGBIO' => 'mbi', 'MBI14_g27051_MAGBIO' => 'mbi', 'MD03G1105500' => 'mdo', 'MD05G1222200' => 'mdo', 'MD06G1088000' => 'mdo', 'MD10G1203800' => 'mdo', 'MD11G1118000' => 'mdo', 'MD13G1220700' => 'mdo', 'MD14G1108900' => 'mdo', 'MD14G1109100' => 'mdo', 'MD16G1225800' => 'mdo', 'Medtr1g044785' => 'mtr', 'Medtr1g073350' => 'mtr', 'Medtr2g068730' => 'mtr', 'Medtr2g096080' => 'mtr', 'Medtr3g006600' => 'mtr', 'Medtr4g061823' => 'mtr', 'Medtr4g061910' => 'mtr', 'Medtr5g010120' => 'mtr', 'Medtr8g098725' => 'mtr', 'MELO3C005695.2' => 'cme', 'MELO3C012623.2' => 'cme', 'MELO3C019654.2' => 'cme', 'MELO3C020684.2' => 'cme', 'MELO3C023041.2' => 'cme', 'MELO3C025709.2' => 'cme', 'Migut.A00747' => 'egut', 'Migut.D02156' => 'egut', 'Migut.G00546' => 'egut', 'Migut.M01547' => 'egut', 'Migut.N00298' => 'egut', 'MSTRG.11970' => 'ama', 'MSTRG.14549' => 'ama', 'MSTRG.21165' => 'ama', 'MSTRG.7065' => 'ama', 'MSTRG.9862' => 'ama', 'Nitab4.5_0000022g0340' => 'nta', 'Nitab4.5_0000194g0270' => 'nta', 'Nitab4.5_0001522g0010' => 'nta', 'Nitab4.5_0001522g0030' => 'nta', 'Nitab4.5_0001980g0100' => 'nta', 'Nitab4.5_0002321g0050' => 'nta', 'Nitab4.5_0002633g0020' => 'nta', 'Nitab4.5_0002751g0060' => 'nta', 'Nitab4.5_0004114g0060' => 'nta', 'Nitab4.5_0008835g0040' => 'nta', 'Nitab4.5_0008854g0010' => 'nta', 'Nitab4.5_0009199g0020' => 'nta', 'Nitab4.5_0009445g0020' => 'nta', 'Nn1g01593' => 'nnu', 'Nn1g02951' => 'nnu', 'Nn2g10563' => 'nnu', 'Nn2g12819' => 'nnu', 'Nn3g19766' => 'nnu', 'Nn6g33335' => 'nnu', 'Nn7g37950' => 'nnu', 'Oeu007741.1' => 'oeu', 'Oeu011225.1' => 'oeu', 'Oeu014306.1' => 'oeu', 'Oeu029003.1' => 'oeu', 'Oeu036614.1' => 'oeu', 'Oeu040265.1' => 'oeu', 'Oeu040996.1' => 'oeu', 'Oeu051670.1' => 'oeu', 'Oeu059560.1' => 'oeu', 'Oeu061387.1' => 'oeu', 'Oeu062310.1' => 'oeu', 'Oeu064853.1' => 'oeu', 'Os01g0835700' => 'osa', 'Os03g0139500' => 'osa', 'Os05g0466100' => 'osa', 'Os10g0466500' => 'osa', 'Os11g0101200' => 'osa', 'Os12g0101000' => 'osa', 'Peaxi162Scf00033g00307' => 'pax', 'Peaxi162Scf00074g02025' => 'pax', 'Peaxi162Scf00169g00319' => 'pax', 'Peaxi162Scf00452g00622' => 'pax', 'Peaxi162Scf00836g00322' => 'pax', 'PGR004G2664' => 'pgr', 'PGR031G0503' => 'pgr', 'PGR031G3329' => 'pgr', 'PGR031G3509' => 'pgr', 'PGR042G2581' => 'pgr', 'PGR083G2114' => 'pgr', 'PGR119G1900' => 'pgr', 'PGSC0003DMG400012193' => 'stu', 'PGSC0003DMG400015524' => 'stu', 'PGSC0003DMG400017148' => 'stu', 'PGSC0003DMG400022124' => 'stu', 'PGSC0003DMG400029253' => 'stu', 'Phvul.002G158500' => 'pvu', 'Phvul.002G291600' => 'pvu', 'Phvul.005G049801' => 'pvu', 'Phvul.007G270600' => 'pvu', 'Phvul.011G069800' => 'pvu', 'Phvul.L001944' => 'pvu', 'Phvul.L002465' => 'pvu', 'Potri.001G101200' => 'ptr', 'Potri.001G136700' => 'ptr', 'Potri.001G233600' => 'ptr', 'Potri.003G130500' => 'ptr', 'Potri.005G097700' => 'ptr', 'Potri.007G066800' => 'ptr', 'Potri.008G171500' => 'ptr', 'Potri.010G066100' => 'ptr', 'Pp3c12_13600' => 'ppa', 'Pp3c3_34580' => 'ppa', 'Pp3c4_6770' => 'ppa', 'Pp3c8_7520' => 'ppa', 'Prupe.1G047400' => 'ppe', 'Prupe.4G138100' => 'ppe', 'Prupe.5G104100' => 'ppe', 'Prupe.6G088100' => 'ppe', 'Psat1g004200' => 'psa', 'Psat2g184400' => 'psa', 'Psat5g282000' => 'psa', 'Psat6g107360' => 'psa', 'Psat6g131680' => 'psa', 'Psat7g031600' => 'psa', 'Psat7g221360' => 'psa', 'PSO063G6721' => 'pso', 'PSO339G4745' => 'pso', 'PSO384G2834' => 'pso', 'PSO478G4985' => 'pso', 'PSO541G0407' => 'pso', 'PSO675G1743' => 'pso', 'PSO675G4458' => 'pso', 'PSO675G4516' => 'pso', 'PSO782G3796' => 'pso', 'PSO832G0188' => 'pso', 'QL01p034599' => 'qlo', 'QL04p077060' => 'qlo', 'QL06p020888' => 'qlo', 'QL12p032366' => 'qlo', 'RcHm_v2.0_Chr4g0395281' => 'rch', 'RcHm_v2.0_Chr5g0026181' => 'rch', 'RcHm_v2.0_Chr5g0062181' => 'rch', 'RcHm_v2.0_Chr7g0197051' => 'rch', 'Rhsim01G0223700' => 'rsi', 'Rhsim02G0043400' => 'rsi', 'Rhsim04G0172700' => 'rsi', 'Rhsim06G0240000' => 'rsi', 'Rhsim07G0088500' => 'rsi', 'Sabra01G0076200' => 'sbr', 'Sabra01G0105800' => 'sbr', 'Sabra03G0092800' => 'sbr', 'Sabra05G0080000' => 'sbr', 'Sabra07G0053400' => 'sbr', 'Sabra10G0041100' => 'sbr', 'SalBow3G0311' => 'sbo', 'SalBow3G0934' => 'sbo', 'SalBow3G1225' => 'sbo', 'SalBow3G1356' => 'sbo', 'SalBow3G2952' => 'sbo', 'SalBow8G2058' => 'sbo', 'SalBow8G3727' => 'sbo', 'SalBow8G4218' => 'sbo', 'Sc07g0009830' => 'sci', 'Sc09g0007680' => 'sci', 'Sc12g0001850' => 'sci', 'Sc19g0003340' => 'sci', 'Sc22g0005470' => 'sci', 'Sed0000359' => 'sed', 'Sed0004309' => 'sed', 'Sed0007122' => 'sed', 'Sed0011603' => 'sed', 'Sed0014817' => 'sed', 'Sed0019895' => 'sed', 'Sed0021707' => 'sed', 'Sed0023179' => 'sed', 'SEGI_28099' => 'sgi', 'SEGI_39721' => 'sgi', 'SEGI_39806' => 'sgi', 'SGA_v2.0_scaffold173G39161' => 'sas', 'SGA_v2.0_scaffold179G39549' => 'sas', 'SGA_v2.0_scaffold239G44049' => 'sas', 'SGA_v2.0_scaffold61G21230' => 'sas', 'SGA_v2.0_scaffold7G03595' => 'sas', 'SHI00844' => 'shi', 'SHI05990' => 'shi', 'SMO202G0067' => 'smo', 'Solyc07g066510.4' => 'sly', 'Solyc08g081350.2' => 'sly', 'Solyc09g090650.3' => 'sly', 'Solyc11g072850.2' => 'sly', 'Solyc12g096940.3' => 'sly', 'Sopen07g034670' => 'spe', 'Sopen08g029670' => 'spe', 'Sopen09g033590' => 'spe', 'Sopen11g030520' => 'spe', 'Sopen12g032750' => 'spe', 'Sp1g03330' => 'spa', 'Sp2g00890' => 'spa', 'Sp3g11030' => 'spa', 'Sp4g15660' => 'spa', 'Sp6g21660' => 'spa', 'Sp7g00570' => 'spa', 'SpUn0010_0050' => 'spa', 'TAR374G0055' => 'tar', 'TAR623G0516' => 'tar', 'TAR627G0514' => 'tar', 'TAR629G1819' => 'tar', 'TAR633G1858' => 'tar', 'TAR636G0780' => 'tar', 'THA.LOC104799467' => 'tha', 'THA.LOC104801068' => 'tha', 'THA.LOC104809375' => 'tha', 'THA.LOC104810263' => 'tha', 'THA.LOC104810820' => 'tha', 'THA.LOC104816005' => 'tha', 'THA.LOC104817876' => 'tha', 'THA.LOC104822755' => 'tha', 'THA.LOC104826094' => 'tha', 'Thecc.03G282900' => 'tca', 'Thecc.04G263300' => 'tca', 'Thecc.07G160100' => 'tca', 'Thecc.09G331400' => 'tca', 'Thhalv10007843m.g' => 'esa', 'Thhalv10014534m.g' => 'esa', 'Thhalv10016744m.g' => 'esa', 'Thhalv10022310m.g' => 'esa', 'Thhalv10023638m.g' => 'esa', 'Thhalv10028337m.g' => 'esa', 'TPR.G11573' => 'tpr', 'TPR.G12941' => 'tpr', 'TPR.G23980' => 'tpr', 'TPR.G28845' => 'tpr', 'TPR.G2974' => 'tpr', 'TPR.G3001' => 'tpr', 'TPR.G33849' => 'tpr', 'TWI09G1141' => 'twi', 'TWI31G1196' => 'twi', 'TWI39G0598' => 'twi', 'TWI60G0720' => 'twi', 'TWI73G0954' => 'twi', 'TWI75G0146' => 'twi', 'unitig_32.g10856' => 'ugi', 'unitig_32.g11697' => 'ugi', 'vmacro08551' => 'vma', 'vmacro11719' => 'vma', 'vmacro13964' => 'vma', 'vmacro14497' => 'vma', 'vmacro15475' => 'vma', 'VMungo0251G0594' => 'vmu', 'VMungo0720G0467' => 'vmu', 'VMungo0720G0889' => 'vmu', 'VMungo1080G1674' => 'vmu', 'VMungo1080G1675' => 'vmu', 'VMungo1127G0752' => 'vmu', 'VMungo1215G1926' => 'vmu', 'Zm00001eb003210' => 'zma', 'Zm00001eb025830' => 'zma', 'Zm00001eb046390' => 'zma', 'Zm00001eb148750' => 'zma', 'Zm00001eb156050' => 'zma', 'Zm00001eb163110' => 'zma', 'Zm00001eb222170' => 'zma', 'Zm00001eb368200' => 'zma', 'Zm00001eb368260' => 'zma', 'Zm00001eb402810' => 'zma' ) $gf_id = 'HOM05D000932' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000932' ) $data_identifier = 'HOM05D000932' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 23, 'aar' => (int) 6, 'aag' => (int) 1, 'ach' => (int) 6, 'amhyb' => (int) 4, 'aly' => (int) 6, 'aox' => (int) 3, 'arhy' => (int) 15, 'ath' => (int) 6, 'atr' => (int) 3, 'acertr' => (int) 5, 'cqu' => (int) 5, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 11, 'can' => (int) 5, 'cansat' => (int) 3, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 4, 'cbr' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 3, 'ccl' => (int) 4, 'cil' => (int) 6, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 1, 'csa' => (int) 6, 'camsi' => (int) 8, 'dca' => (int) 8, 'din' => (int) 7, 'dzi' => (int) 8, 'eca' => (int) 6, 'bvu' => (int) 4, 'egr' => (int) 7, 'fan' => (int) 16, 'fve' => (int) 5, 'gma' => (int) 14, 'ghi' => (int) 25, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 8, 'cav' => (int) 4, 'hma' => (int) 3, 'vpl' => (int) 3, 'sun' => (int) 4, 'lal' => (int) 9, 'lonja' => (int) 4, 'lja' => (int) 7, 'lsa' => (int) 7, 'mes' => (int) 8, 'mpo' => (int) 1, 'mbi' => (int) 9, 'mdo' => (int) 9, 'mtr' => (int) 9, 'cme' => (int) 6, 'egut' => (int) 5, 'ama' => (int) 5, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 12, 'osa' => (int) 6, 'pax' => (int) 5, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 8, 'ppa' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 7, 'pso' => (int) 10, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 5, 'sbr' => (int) 6, 'sbo' => (int) 8, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 3, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 1, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 7, 'tar' => (int) 6, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 7, 'twi' => (int) 6, 'ugi' => (int) 2, 'vma' => (int) 5, 'vmu' => (int) 7, 'zma' => (int) 10 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb402810' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1